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Aug 5, 2018
Category: General
Posted by: sro

Pengumuman

Diberitahukan kepada seluruh mahasiswa Departemen Statistika IPB yang sedang atau hampir menyelesaikan tugas akhir (skripsi), diharapkan untuk dapat menerbitkan makalah tigas akhirnya sebagai syarat kelulusan sarjana.

Aug 5, 2018
Category: Academic
Posted by: sro
Setelah dilakukan pelatihan calon asisten MK Departemen Statistika yang pertama pada tanggal 29 Juni 2018, diperoleh beberapa catatan dari hasil diskusi dan pemaparan dari Bu Itasia.
Jun 6, 2018
Category: Academic
Posted by: sro

Pengumuman

Berikut ini adalah daftar calon asisten mata kuliah di Departemen Statistika IPB Semester Ganjil T.A 2018/2019

 

Biostatistics Workshop

Next Generation Sequencing Data Analysis: A Practical Introduction

 

October 21st, 2017

IPB International Convention Center (IICC), Bogor

Register on: s.id/biostatistics

 

Payment information

To join this workshop, the candidate participants have to pay the workshop fee by transfer via bank:

Bank Mandiri
Acc name: Dept. Statistika FMIPA IPB
Acc number: 133 – 00 – 1143069 – 1
 
with fee criterias IDR 800.000/person NETT.
 
The proof of transfer payment have to be sent by email to both rahardiantoro.stk@gmail.com and r.rahma.anisa@gmail.com
 
 
 
 
 

Software Preparation & Materials

 

These are the software that need to be installed in the server (please ensure that the paths to the executable files are added to bash.profile file):

- FastQC
- FastX toolkit
- Trimmomatic
- Samtools
- Bowtie2 (if it has not been installed)

Please also install the Bioconductor suite from inside R using this command:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite()

After installing the suite, you will need to install the following packages:
biocLite("tweeDEseqCountData")
biocLite("edgeR")
biocLite("RSamtools")
biocLite("qvalue")
install_github("genomicsclass/tissuesGeneExpression")
install_github("genomicsclass/GSE5859Subset")
install.packages("rafalib")
install.packages("irlba")
install.packages("mclust")
install.packages("RColorBrewer")
biocLite("MAST")
biocLite("scde")


Materials

Lecture 1: Brief introduction to next-gen sequencing (NGS), Statistical Methods for NGS Data
Lab 1: Practical NGS Data Analysis
From Quality Control (QC) to DE analysis
Lecture 2: Brief introduction to single-cell omics technology, Statistical Methods for Single-Cell Omics Data
Lab 2: Practical single-cell Data Analysis
Quality controls, clustering, pseudo-time and DE analysis

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